main1.cpp File Reference

File containing main driver routine for CoreNeuron. More...

Detailed Description

File containing main driver routine for CoreNeuron.

Date

26 Oct 2014

Definition in file main1.cpp.

#include <cstring>
#include <climits>
#include <dlfcn.h>
#include <memory>
#include <vector>
#include "coreneuron/config/config.h"
#include "coreneuron/utils/randoms/nrnran123.h"
#include "coreneuron/nrnconf.h"
#include "coreneuron/sim/fast_imem.hpp"
#include "coreneuron/sim/multicore.hpp"
#include "coreneuron/mpi/nrnmpi.h"
#include "coreneuron/nrniv/nrniv_decl.h"
#include "coreneuron/mechanism/register_mech.hpp"
#include "coreneuron/io/output_spikes.hpp"
#include "coreneuron/io/nrn_checkpoint.hpp"
#include "coreneuron/utils/memory_utils.h"
#include "coreneuron/apps/corenrn_parameters.hpp"
#include "coreneuron/io/prcellstate.hpp"
#include "coreneuron/utils/nrn_stats.h"
#include "coreneuron/io/reports/nrnreport.hpp"
#include "coreneuron/io/reports/binary_report_handler.hpp"
#include "coreneuron/io/reports/report_handler.hpp"
#include "coreneuron/io/reports/sonata_report_handler.hpp"
#include "coreneuron/gpu/nrn_acc_manager.hpp"
#include "coreneuron/utils/profile/profiler_interface.h"
#include "coreneuron/network/partrans.hpp"
#include "coreneuron/network/multisend.hpp"
#include "coreneuron/io/nrn_setup.hpp"
#include "coreneuron/io/file_utils.hpp"
#include "coreneuron/io/nrn2core_direct.h"
#include "coreneuron/io/core2nrn_data_return.hpp"
#include "coreneuron/utils/utils.hpp"

Go to the source code of this file.

Namespaces
	coreneuron
	THIS FILE IS AUTO GENERATED DONT MODIFY IT.

Functions
const char *	corenrn_version ()
bool	corenrn_units_use_legacy ()
void	set_openmp_threads (int nthread)
	If "export OMP_NUM_THREADS=n" is not set then omp by default sets the number of threads equal to the number of cores on this node. More...
char *	prepare_args (int &argc, char **&argv, int use_mpi, const char *mpi_lib, const char *arg)
	Convert char* containing arguments from neuron to char* argv[] for coreneuron command line argument parser. More...
void	coreneuron::call_prcellstate_for_prcellgid (int prcellgid, int compute_gpu, int is_init)
void	coreneuron::get_nrn_trajectory_requests (int bsize)
void	coreneuron::nrn_init_and_load_data (int argc, char *argv[], CheckPoints &checkPoints, bool is_mapping_needed, bool run_setup_cleanup)
void	coreneuron::handle_forward_skip (double forwardskip, int prcellgid)
std::string	coreneuron::cnrn_version ()
static void	coreneuron::trajectory_return ()
std::unique_ptr< ReportHandler >	coreneuron::create_report_handler (const ReportConfiguration &config, const SpikesInfo &spikes_info)
void	mk_mech_init (int argc, char **argv)
	initialize standard mechanisms from coreneuron More...
int	run_solve_core (int argc, char **argv)

Variables
void(*	nrn2core_part2_clean_ )()

Function Documentation

corenrn_units_use_legacy()

bool corenrn_units_use_legacy

(

)

Definition at line 55 of file main1.cpp.

corenrn_version()

const char* corenrn_version

(

)

Definition at line 50 of file main1.cpp.

mk_mech_init()

void mk_mech_init	(	int	argc,
		char **	argv
	)

initialize standard mechanisms from coreneuron

Definition at line 466 of file main1.cpp.

prepare_args()

char* prepare_args	(	int &	argc,
		char **&	argv,
		int	use_mpi,
		const char *	mpi_lib,
		const char *	arg
	)

Convert char* containing arguments from neuron to char* argv[] for coreneuron command line argument parser.

parse arguments from neuron and prepare new one for coreneuron

Definition at line 81 of file main1.cpp.

run_solve_core()

int run_solve_core	(	int	argc,
		char **	argv
	)

Solver execution

Definition at line 520 of file main1.cpp.

set_openmp_threads()

void set_openmp_threads

(

int

nthread

)

If "export OMP_NUM_THREADS=n" is not set then omp by default sets the number of threads equal to the number of cores on this node.

set openmp threads equal to neuron's pthread

If there are a number of mpi processes on this node as well, things can go very slowly as there are so many more threads than cores. Assume the NEURON users pc.nthread() is well chosen if OMP_NUM_THREADS is not set.

Definition at line 69 of file main1.cpp.

Variable Documentation

nrn2core_part2_clean_

void(* nrn2core_part2_clean_) ()

Definition at line 59 of file main1.cpp.