nrn_setup.hpp File Reference

#include <string>
#include "coreneuron/sim/multicore.hpp"
#include "coreneuron/io/nrn_filehandler.hpp"
#include "coreneuron/io/nrn2core_direct.h"
#include "coreneuron/io/user_params.hpp"
#include "coreneuron/io/mem_layout_util.hpp"
#include "coreneuron/io/nrn_checkpoint.hpp"

Go to the source code of this file.

Namespaces
	coreneuron
	THIS FILE IS AUTO GENERATED DONT MODIFY IT.
	coreneuron::coreneuron

Enumerations
enum	coreneuron::coreneuron::phase { coreneuron::coreneuron::one = 1, coreneuron::coreneuron::two, coreneuron::coreneuron::three, coreneuron::coreneuron::gap }
	Reading phase number. More...

Functions
void	coreneuron::read_phase1 (NrnThread &nt, UserParams &userParams)
void	coreneuron::read_phase2 (NrnThread &nt, UserParams &userParams)
void	coreneuron::read_phase3 (NrnThread &nt, UserParams &userParams)
	read mapping information for neurons More...
void	coreneuron::read_phasegap (NrnThread &nt, UserParams &userParams)
void	coreneuron::setup_ThreadData (NrnThread &nt)
void	coreneuron::nrn_setup (const char *filesdat, bool is_mapping_needed, CheckPoints &checkPoints, bool run_setup_cleanup, const char *datpath, const char *restore_path, double *mindelay)
void	coreneuron::nrn_init_and_load_data (int argc, char **argv, CheckPoints &checkPoints, bool is_mapping_needed=false, bool run_setup_cleanup=true)
void	coreneuron::allocate_data_in_mechanism_nrn_init ()
void	coreneuron::nrn_setup_cleanup ()
	Clean up. More...
int	coreneuron::nrn_i_layout (int icnt, int cnt, int isz, int sz, int layout)
	This function return the index in a flat array of a matrix coordinate (icnt, isz). More...
size_t	coreneuron::memb_list_size (NrnThreadMembList *tml, bool include_data)
size_t	coreneuron::model_size (bool detailed_report)
template<phase P>
std::string	coreneuron::coreneuron::getPhaseName ()
	Get the phase number in form of the string. More...
template<>
std::string	coreneuron::coreneuron::getPhaseName< one > ()
template<>
std::string	coreneuron::coreneuron::getPhaseName< two > ()
template<>
std::string	coreneuron::coreneuron::getPhaseName< three > ()
template<>
std::string	coreneuron::coreneuron::getPhaseName< gap > ()
template<phase P>
void	coreneuron::coreneuron::read_phase_aux (NrnThread &nt, UserParams &)
	Reading phase selector. More...
template<>
void	coreneuron::coreneuron::read_phase_aux< one > (NrnThread &nt, UserParams &userParams)
template<>
void	coreneuron::coreneuron::read_phase_aux< two > (NrnThread &nt, UserParams &userParams)
template<>
void	coreneuron::coreneuron::read_phase_aux< three > (NrnThread &nt, UserParams &userParams)
template<>
void	coreneuron::coreneuron::read_phase_aux< gap > (NrnThread &nt, UserParams &userParams)
template<phase P>
void *	coreneuron::coreneuron::phase_wrapper_w (NrnThread *nt, UserParams &userParams, bool in_memory_transfer)
	Reading phase wrapper for each neuron group. More...
template<phase P>
static void	coreneuron::coreneuron::phase_wrapper (UserParams &userParams, int direct=0)
	Specific phase reading executed by threads. More...