NMODL
0.6

Introduction:

  • The NMODL Framework
  • Installing the NMODL Framework
  • The NEURON MODeling language

Contents:

  • Visitors
  • Currents
  • Ions
  • NMODL “pointers”
  • Cable Equation
  • Global Variables
  • Longitudinal Diffusion
  • Variable timestep integration (CVODE)

Jupyter Notebooks:

  • The NMODL Jupyter notebooks
  • NMODL Python Interface Tutorial
  • NMODL integration of ODEs
  • NMODL Kinetic Scheme
  • NMODL SympySolver - cnexp
  • NMODL SympySolver - sparse
  • NMODL SympySolver - derivimplicit
  • NMODL LINEAR solver
  • NMODL NONLINEAR solver
  • NMODL CONDUCTANCE

Contributing:

  • Contributing to the NMODL Framework

Reference:

  • Python package
  • C++ API
NMODL
  • Index

Index

D | F | G | I | L | M | N | P | S | T | V

D

  • differentiate2c() (in module nmodl.ode)
  • discretize_derivative() (in module nmodl.ode)

F

  • finite_difference_step_variable() (in module nmodl.ode)
  • forwards_euler2c() (in module nmodl.ode)

G

  • get_ast() (nmodl.NmodlDriver method)

I

  • integrate2c() (in module nmodl.ode)

L

  • list_examples() (in module nmodl.dsl)
  • load_example() (in module nmodl.dsl)

M

  • make_symbol() (in module nmodl.ode)
  • module
    • nmodl
    • nmodl.ast
    • nmodl.dsl
    • nmodl.ode
    • nmodl.symtab
    • nmodl.visitor

N

  • needs_finite_differences() (in module nmodl.ode)
  • nmodl
    • module
  • nmodl.ast
    • module
  • nmodl.dsl
    • module
  • nmodl.ode
    • module
  • nmodl.symtab
    • module
  • nmodl.visitor
    • module
  • NmodlDriver (class in nmodl)

P

  • parse_file() (nmodl.NmodlDriver method)
  • parse_stream() (nmodl.NmodlDriver method)
  • parse_string() (nmodl.NmodlDriver method)

S

  • search_and_replace_protected_identifiers_from_sympy() (in module nmodl.ode)
  • search_and_replace_protected_identifiers_to_sympy() (in module nmodl.ode)
  • solve_lin_system() (in module nmodl.ode)
  • solve_non_lin_system() (in module nmodl.ode)

T

  • to_json() (in module nmodl)
  • to_nmodl() (in module nmodl)
  • transform_expression() (in module nmodl.ode)
  • transform_matrix_elements() (in module nmodl.ode)

V

  • view() (in module nmodl.ast)

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