User Guide
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Represent COMPARTMENT statement in NMODL. More...
Represent COMPARTMENT statement in NMODL.
Definition at line 39 of file compartment.hpp.
#include <compartment.hpp>
Public Member Functions | |
bool | is_compartment () const noexcept override |
Check if the ast node is an instance of ast::Compartment. More... | |
Compartment * | clone () const override |
Return a copy of the current node. More... | |
Ctor & dtor | |
Compartment (Name *index_name, Expression *volume, const NameVector &species) | |
Compartment (std::shared_ptr< Name > index_name, std::shared_ptr< Expression > volume, const NameVector &species) | |
Compartment (const Compartment &obj) | |
copy constructor implementation More... | |
virtual | ~Compartment ()=default |
Getters | |
AstNodeType | get_node_type () const noexcept override |
Return type (ast::AstNodeType) of ast node. More... | |
std::string | get_node_type_name () const noexcept override |
Return type (ast::AstNodeType) of ast node as std::string. More... | |
std::string | get_nmodl_name () const noexcept override |
Return NMODL statement of ast node as std::string. More... | |
std::shared_ptr< Ast > | get_shared_ptr () override |
Get std::shared_ptr from this pointer of the current ast node. More... | |
std::shared_ptr< const Ast > | get_shared_ptr () const override |
Get std::shared_ptr from this pointer of the current ast node. More... | |
const ModToken * | get_token () const noexcept override |
Return associated token for the current ast node. More... | |
std::shared_ptr< Name > | get_index_name () const noexcept |
Getter for member variable Compartment::index_name. More... | |
std::shared_ptr< Expression > | get_volume () const noexcept |
Getter for member variable Compartment::volume. More... | |
const NameVector & | get_species () const noexcept |
Getter for member variable Compartment::species. More... | |
Setters | |
void | set_token (const ModToken &tok) |
Set token for the current ast node. More... | |
void | set_index_name (std::shared_ptr< Name > &&index_name) |
Setter for member variable Compartment::index_name (rvalue reference) More... | |
void | set_index_name (const std::shared_ptr< Name > &index_name) |
Setter for member variable Compartment::index_name. More... | |
void | set_volume (std::shared_ptr< Expression > &&volume) |
Setter for member variable Compartment::volume (rvalue reference) More... | |
void | set_volume (const std::shared_ptr< Expression > &volume) |
Setter for member variable Compartment::volume. More... | |
void | set_species (NameVector &&species) |
Setter for member variable Compartment::species (rvalue reference) More... | |
void | set_species (const NameVector &species) |
Setter for member variable Compartment::species. More... | |
Visitor | |
void | visit_children (visitor::Visitor &v) override |
visit children i.e. More... | |
void | visit_children (visitor::ConstVisitor &v) const override |
visit children i.e. More... | |
void | accept (visitor::Visitor &v) override |
accept (or visit) the current AST node using provided visitor More... | |
void | accept (visitor::ConstVisitor &v) const override |
accept (or visit) the current AST node using provided visitor More... | |
Public Member Functions inherited from nmodl::ast::Statement | |
bool | is_statement () const noexcept override |
Check if the ast node is an instance of ast::Statement. More... | |
Statement * | clone () const override |
Return a copy of the current node. More... | |
virtual | ~Statement ()=default |
AstNodeType | get_node_type () const noexcept override |
Return type (ast::AstNodeType) of ast node. More... | |
std::string | get_node_type_name () const noexcept override |
Return type (ast::AstNodeType) of ast node as std::string. More... | |
std::shared_ptr< Ast > | get_shared_ptr () override |
Get std::shared_ptr from this pointer of the current ast node. More... | |
std::shared_ptr< const Ast > | get_shared_ptr () const override |
Get std::shared_ptr from this pointer of the current ast node. More... | |
void | visit_children (visitor::Visitor &v) override |
visit children i.e. More... | |
void | visit_children (visitor::ConstVisitor &v) const override |
visit children i.e. More... | |
void | accept (visitor::Visitor &v) override |
accept (or visit) the current AST node using provided visitor More... | |
void | accept (visitor::ConstVisitor &v) const override |
accept (or visit) the current AST node using provided visitor More... | |
Public Member Functions inherited from nmodl::ast::Node | |
bool | is_node () const noexcept override |
Check if the ast node is an instance of ast::Node. More... | |
virtual | ~Node ()=default |
Public Member Functions inherited from nmodl::ast::Ast | |
virtual bool | is_ast () const noexcept |
Check if the ast node is an instance of ast::Ast. More... | |
virtual bool | is_expression () const noexcept |
Check if the ast node is an instance of ast::Expression. More... | |
virtual bool | is_block () const noexcept |
Check if the ast node is an instance of ast::Block. More... | |
virtual bool | is_identifier () const noexcept |
Check if the ast node is an instance of ast::Identifier. More... | |
virtual bool | is_number () const noexcept |
Check if the ast node is an instance of ast::Number. More... | |
virtual bool | is_string () const noexcept |
Check if the ast node is an instance of ast::String. More... | |
virtual bool | is_integer () const noexcept |
Check if the ast node is an instance of ast::Integer. More... | |
virtual bool | is_float () const noexcept |
Check if the ast node is an instance of ast::Float. More... | |
virtual bool | is_double () const noexcept |
Check if the ast node is an instance of ast::Double. More... | |
virtual bool | is_boolean () const noexcept |
Check if the ast node is an instance of ast::Boolean. More... | |
virtual bool | is_name () const noexcept |
Check if the ast node is an instance of ast::Name. More... | |
virtual bool | is_prime_name () const noexcept |
Check if the ast node is an instance of ast::PrimeName. More... | |
virtual bool | is_indexed_name () const noexcept |
Check if the ast node is an instance of ast::IndexedName. More... | |
virtual bool | is_var_name () const noexcept |
Check if the ast node is an instance of ast::VarName. More... | |
virtual bool | is_argument () const noexcept |
Check if the ast node is an instance of ast::Argument. More... | |
virtual bool | is_react_var_name () const noexcept |
Check if the ast node is an instance of ast::ReactVarName. More... | |
virtual bool | is_read_ion_var () const noexcept |
Check if the ast node is an instance of ast::ReadIonVar. More... | |
virtual bool | is_write_ion_var () const noexcept |
Check if the ast node is an instance of ast::WriteIonVar. More... | |
virtual bool | is_nonspecific_cur_var () const noexcept |
Check if the ast node is an instance of ast::NonspecificCurVar. More... | |
virtual bool | is_electrode_cur_var () const noexcept |
Check if the ast node is an instance of ast::ElectrodeCurVar. More... | |
virtual bool | is_range_var () const noexcept |
Check if the ast node is an instance of ast::RangeVar. More... | |
virtual bool | is_global_var () const noexcept |
Check if the ast node is an instance of ast::GlobalVar. More... | |
virtual bool | is_pointer_var () const noexcept |
Check if the ast node is an instance of ast::PointerVar. More... | |
virtual bool | is_random_var () const noexcept |
Check if the ast node is an instance of ast::RandomVar. More... | |
virtual bool | is_bbcore_pointer_var () const noexcept |
Check if the ast node is an instance of ast::BbcorePointerVar. More... | |
virtual bool | is_extern_var () const noexcept |
Check if the ast node is an instance of ast::ExternVar. More... | |
virtual bool | is_param_block () const noexcept |
Check if the ast node is an instance of ast::ParamBlock. More... | |
virtual bool | is_independent_block () const noexcept |
Check if the ast node is an instance of ast::IndependentBlock. More... | |
virtual bool | is_assigned_block () const noexcept |
Check if the ast node is an instance of ast::AssignedBlock. More... | |
virtual bool | is_state_block () const noexcept |
Check if the ast node is an instance of ast::StateBlock. More... | |
virtual bool | is_initial_block () const noexcept |
Check if the ast node is an instance of ast::InitialBlock. More... | |
virtual bool | is_constructor_block () const noexcept |
Check if the ast node is an instance of ast::ConstructorBlock. More... | |
virtual bool | is_destructor_block () const noexcept |
Check if the ast node is an instance of ast::DestructorBlock. More... | |
virtual bool | is_statement_block () const noexcept |
Check if the ast node is an instance of ast::StatementBlock. More... | |
virtual bool | is_derivative_block () const noexcept |
Check if the ast node is an instance of ast::DerivativeBlock. More... | |
virtual bool | is_linear_block () const noexcept |
Check if the ast node is an instance of ast::LinearBlock. More... | |
virtual bool | is_non_linear_block () const noexcept |
Check if the ast node is an instance of ast::NonLinearBlock. More... | |
virtual bool | is_discrete_block () const noexcept |
Check if the ast node is an instance of ast::DiscreteBlock. More... | |
virtual bool | is_function_table_block () const noexcept |
Check if the ast node is an instance of ast::FunctionTableBlock. More... | |
virtual bool | is_function_block () const noexcept |
Check if the ast node is an instance of ast::FunctionBlock. More... | |
virtual bool | is_procedure_block () const noexcept |
Check if the ast node is an instance of ast::ProcedureBlock. More... | |
virtual bool | is_net_receive_block () const noexcept |
Check if the ast node is an instance of ast::NetReceiveBlock. More... | |
virtual bool | is_solve_block () const noexcept |
Check if the ast node is an instance of ast::SolveBlock. More... | |
virtual bool | is_breakpoint_block () const noexcept |
Check if the ast node is an instance of ast::BreakpointBlock. More... | |
virtual bool | is_before_block () const noexcept |
Check if the ast node is an instance of ast::BeforeBlock. More... | |
virtual bool | is_after_block () const noexcept |
Check if the ast node is an instance of ast::AfterBlock. More... | |
virtual bool | is_ba_block () const noexcept |
Check if the ast node is an instance of ast::BABlock. More... | |
virtual bool | is_for_netcon () const noexcept |
Check if the ast node is an instance of ast::ForNetcon. More... | |
virtual bool | is_kinetic_block () const noexcept |
Check if the ast node is an instance of ast::KineticBlock. More... | |
virtual bool | is_unit_block () const noexcept |
Check if the ast node is an instance of ast::UnitBlock. More... | |
virtual bool | is_constant_block () const noexcept |
Check if the ast node is an instance of ast::ConstantBlock. More... | |
virtual bool | is_neuron_block () const noexcept |
Check if the ast node is an instance of ast::NeuronBlock. More... | |
virtual bool | is_unit () const noexcept |
Check if the ast node is an instance of ast::Unit. More... | |
virtual bool | is_double_unit () const noexcept |
Check if the ast node is an instance of ast::DoubleUnit. More... | |
virtual bool | is_local_var () const noexcept |
Check if the ast node is an instance of ast::LocalVar. More... | |
virtual bool | is_limits () const noexcept |
Check if the ast node is an instance of ast::Limits. More... | |
virtual bool | is_number_range () const noexcept |
Check if the ast node is an instance of ast::NumberRange. More... | |
virtual bool | is_constant_var () const noexcept |
Check if the ast node is an instance of ast::ConstantVar. More... | |
virtual bool | is_binary_operator () const noexcept |
Check if the ast node is an instance of ast::BinaryOperator. More... | |
virtual bool | is_unary_operator () const noexcept |
Check if the ast node is an instance of ast::UnaryOperator. More... | |
virtual bool | is_reaction_operator () const noexcept |
Check if the ast node is an instance of ast::ReactionOperator. More... | |
virtual bool | is_paren_expression () const noexcept |
Check if the ast node is an instance of ast::ParenExpression. More... | |
virtual bool | is_binary_expression () const noexcept |
Check if the ast node is an instance of ast::BinaryExpression. More... | |
virtual bool | is_diff_eq_expression () const noexcept |
Check if the ast node is an instance of ast::DiffEqExpression. More... | |
virtual bool | is_unary_expression () const noexcept |
Check if the ast node is an instance of ast::UnaryExpression. More... | |
virtual bool | is_non_lin_equation () const noexcept |
Check if the ast node is an instance of ast::NonLinEquation. More... | |
virtual bool | is_lin_equation () const noexcept |
Check if the ast node is an instance of ast::LinEquation. More... | |
virtual bool | is_function_call () const noexcept |
Check if the ast node is an instance of ast::FunctionCall. More... | |
virtual bool | is_watch () const noexcept |
Check if the ast node is an instance of ast::Watch. More... | |
virtual bool | is_ba_block_type () const noexcept |
Check if the ast node is an instance of ast::BABlockType. More... | |
virtual bool | is_unit_def () const noexcept |
Check if the ast node is an instance of ast::UnitDef. More... | |
virtual bool | is_factor_def () const noexcept |
Check if the ast node is an instance of ast::FactorDef. More... | |
virtual bool | is_valence () const noexcept |
Check if the ast node is an instance of ast::Valence. More... | |
virtual bool | is_unit_state () const noexcept |
Check if the ast node is an instance of ast::UnitState. More... | |
virtual bool | is_local_list_statement () const noexcept |
Check if the ast node is an instance of ast::LocalListStatement. More... | |
virtual bool | is_model () const noexcept |
Check if the ast node is an instance of ast::Model. More... | |
virtual bool | is_define () const noexcept |
Check if the ast node is an instance of ast::Define. More... | |
virtual bool | is_include () const noexcept |
Check if the ast node is an instance of ast::Include. More... | |
virtual bool | is_param_assign () const noexcept |
Check if the ast node is an instance of ast::ParamAssign. More... | |
virtual bool | is_assigned_definition () const noexcept |
Check if the ast node is an instance of ast::AssignedDefinition. More... | |
virtual bool | is_conductance_hint () const noexcept |
Check if the ast node is an instance of ast::ConductanceHint. More... | |
virtual bool | is_expression_statement () const noexcept |
Check if the ast node is an instance of ast::ExpressionStatement. More... | |
virtual bool | is_protect_statement () const noexcept |
Check if the ast node is an instance of ast::ProtectStatement. More... | |
virtual bool | is_from_statement () const noexcept |
Check if the ast node is an instance of ast::FromStatement. More... | |
virtual bool | is_while_statement () const noexcept |
Check if the ast node is an instance of ast::WhileStatement. More... | |
virtual bool | is_if_statement () const noexcept |
Check if the ast node is an instance of ast::IfStatement. More... | |
virtual bool | is_else_if_statement () const noexcept |
Check if the ast node is an instance of ast::ElseIfStatement. More... | |
virtual bool | is_else_statement () const noexcept |
Check if the ast node is an instance of ast::ElseStatement. More... | |
virtual bool | is_watch_statement () const noexcept |
Check if the ast node is an instance of ast::WatchStatement. More... | |
virtual bool | is_mutex_lock () const noexcept |
Check if the ast node is an instance of ast::MutexLock. More... | |
virtual bool | is_mutex_unlock () const noexcept |
Check if the ast node is an instance of ast::MutexUnlock. More... | |
virtual bool | is_conserve () const noexcept |
Check if the ast node is an instance of ast::Conserve. More... | |
virtual bool | is_lon_diffuse () const noexcept |
Check if the ast node is an instance of ast::LonDiffuse. More... | |
virtual bool | is_reaction_statement () const noexcept |
Check if the ast node is an instance of ast::ReactionStatement. More... | |
virtual bool | is_lag_statement () const noexcept |
Check if the ast node is an instance of ast::LagStatement. More... | |
virtual bool | is_constant_statement () const noexcept |
Check if the ast node is an instance of ast::ConstantStatement. More... | |
virtual bool | is_table_statement () const noexcept |
Check if the ast node is an instance of ast::TableStatement. More... | |
virtual bool | is_suffix () const noexcept |
Check if the ast node is an instance of ast::Suffix. More... | |
virtual bool | is_useion () const noexcept |
Check if the ast node is an instance of ast::Useion. More... | |
virtual bool | is_nonspecific () const noexcept |
Check if the ast node is an instance of ast::Nonspecific. More... | |
virtual bool | is_electrode_current () const noexcept |
Check if the ast node is an instance of ast::ElectrodeCurrent. More... | |
virtual bool | is_range () const noexcept |
Check if the ast node is an instance of ast::Range. More... | |
virtual bool | is_global () const noexcept |
Check if the ast node is an instance of ast::Global. More... | |
virtual bool | is_random_var_list () const noexcept |
Check if the ast node is an instance of ast::RandomVarList. More... | |
virtual bool | is_pointer () const noexcept |
Check if the ast node is an instance of ast::Pointer. More... | |
virtual bool | is_bbcore_pointer () const noexcept |
Check if the ast node is an instance of ast::BbcorePointer. More... | |
virtual bool | is_external () const noexcept |
Check if the ast node is an instance of ast::External. More... | |
virtual bool | is_thread_safe () const noexcept |
Check if the ast node is an instance of ast::ThreadSafe. More... | |
virtual bool | is_verbatim () const noexcept |
Check if the ast node is an instance of ast::Verbatim. More... | |
virtual bool | is_line_comment () const noexcept |
Check if the ast node is an instance of ast::LineComment. More... | |
virtual bool | is_block_comment () const noexcept |
Check if the ast node is an instance of ast::BlockComment. More... | |
virtual bool | is_ontology_statement () const noexcept |
Check if the ast node is an instance of ast::OntologyStatement. More... | |
virtual bool | is_program () const noexcept |
Check if the ast node is an instance of ast::Program. More... | |
virtual bool | is_nrn_state_block () const noexcept |
Check if the ast node is an instance of ast::NrnStateBlock. More... | |
virtual bool | is_eigen_newton_solver_block () const noexcept |
Check if the ast node is an instance of ast::EigenNewtonSolverBlock. More... | |
virtual bool | is_eigen_linear_solver_block () const noexcept |
Check if the ast node is an instance of ast::EigenLinearSolverBlock. More... | |
virtual bool | is_cvode_block () const noexcept |
Check if the ast node is an instance of ast::CvodeBlock. More... | |
virtual bool | is_longitudinal_diffusion_block () const noexcept |
Check if the ast node is an instance of ast::LongitudinalDiffusionBlock. More... | |
virtual bool | is_wrapped_expression () const noexcept |
Check if the ast node is an instance of ast::WrappedExpression. More... | |
virtual bool | is_derivimplicit_callback () const noexcept |
Check if the ast node is an instance of ast::DerivimplicitCallback. More... | |
virtual bool | is_solution_expression () const noexcept |
Check if the ast node is an instance of ast::SolutionExpression. More... | |
virtual bool | is_update_dt () const noexcept |
Check if the ast node is an instance of ast::UpdateDt. More... | |
virtual Ast * | get_parent () const |
Parent getter. More... | |
virtual void | set_parent (Ast *p) |
Parent setter. More... | |
Ast ()=default | |
virtual | ~Ast ()=default |
virtual std::string | get_node_name () const |
Return name of of the node. More... | |
virtual symtab::SymbolTable * | get_symbol_table () const |
Return associated symbol table for the AST node. More... | |
virtual std::shared_ptr< StatementBlock > | get_statement_block () const |
Return associated statement block for the AST node. More... | |
virtual void | set_symbol_table (symtab::SymbolTable *symtab) |
Set symbol table for the AST node. More... | |
virtual void | set_name (const std::string &name) |
Set name for the AST node. More... | |
virtual void | negate () |
Negate the value of AST node. More... | |
Private Member Functions | |
void | set_parent_in_children () |
Set this object as parent for all the children. More... | |
Private Attributes | |
std::shared_ptr< Name > | index_name |
Name of the index variable in volume expression. More... | |
std::shared_ptr< Expression > | volume |
The volume of the compartment. More... | |
NameVector | species |
The names of the species that reside in this compartment. More... | |
std::shared_ptr< ModToken > | token |
token with location information More... | |
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explicit |
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explicit |
nmodl::ast::Compartment::Compartment | ( | const Compartment & | obj | ) |
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virtualdefault |
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overridevirtual |
accept (or visit) the current AST node using provided visitor
Instead of visiting children of AST node, like Ast::visit_children, accept allows to visit the current node itself using provided concrete visitor.
v | Concrete visitor that will be used to recursively visit node |
Implements nmodl::ast::Ast.
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overridevirtual |
accept (or visit) the current AST node using provided visitor
Instead of visiting children of AST node, like Ast::visit_children, accept allows to visit the current node itself using provided concrete visitor.
v | Concrete visitor that will be used to recursively visit node |
Implements nmodl::ast::Ast.
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inlineoverridevirtual |
Return a copy of the current node.
Recursively make a new copy/clone of the current node including all members and return a pointer to the node. This is used for passes like nmodl::visitor::InlineVisitor where nodes are cloned in the ast.
Reimplemented from nmodl::ast::Ast.
Definition at line 78 of file compartment.hpp.
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inlinenoexcept |
Getter for member variable Compartment::index_name.
Definition at line 162 of file compartment.hpp.
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inlineoverridevirtualnoexcept |
Return NMODL statement of ast node as std::string.
Every node is related to a special statement in the NMODL. This statement can be returned as a std::string for printing to text/json form.
Reimplemented from nmodl::ast::Ast.
Definition at line 126 of file compartment.hpp.
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inlineoverridevirtualnoexcept |
Return type (ast::AstNodeType) of ast node.
Every node in the ast has a type defined in ast::AstNodeType and this function is used to retrieve the same.
Implements nmodl::ast::Ast.
Definition at line 96 of file compartment.hpp.
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inlineoverridevirtualnoexcept |
Return type (ast::AstNodeType) of ast node as std::string.
Every node in the ast has a type defined in ast::AstNodeType. This type name can be returned as a std::string for printing node to text/json form.
Implements nmodl::ast::Ast.
Definition at line 111 of file compartment.hpp.
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inlineoverridevirtual |
Get std::shared_ptr from this
pointer of the current ast node.
Reimplemented from nmodl::ast::Ast.
Definition at line 140 of file compartment.hpp.
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inlineoverridevirtual |
Get std::shared_ptr from this
pointer of the current ast node.
Reimplemented from nmodl::ast::Ast.
Definition at line 133 of file compartment.hpp.
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inlinenoexcept |
Getter for member variable Compartment::species.
Definition at line 180 of file compartment.hpp.
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inlineoverridevirtualnoexcept |
Return associated token for the current ast node.
Not all ast nodes have token information. For example, nmodl::visitor::NeuronSolveVisitor can insert new nodes in the ast as a solution of ODEs. In this case, we return nullptr to store in the nmodl::symtab::SymbolTable.
Reimplemented from nmodl::ast::Ast.
Definition at line 153 of file compartment.hpp.
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inlinenoexcept |
Getter for member variable Compartment::volume.
Definition at line 171 of file compartment.hpp.
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inlineoverridevirtualnoexcept |
Check if the ast node is an instance of ast::Compartment.
Reimplemented from nmodl::ast::Ast.
Definition at line 63 of file compartment.hpp.
void nmodl::ast::Compartment::set_index_name | ( | const std::shared_ptr< Name > & | index_name | ) |
Setter for member variable Compartment::index_name.
void nmodl::ast::Compartment::set_index_name | ( | std::shared_ptr< Name > && | index_name | ) |
Setter for member variable Compartment::index_name (rvalue reference)
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private |
Set this object as parent for all the children.
set this parent in the children
This should be called in every object (with children) constructor to set parents. Since it is called only in the constructors it should not be virtual to avoid ambiguities (issue #295).
optional member could be nullptr
optional member could be nullptr
set parent for each element of the vector
void nmodl::ast::Compartment::set_species | ( | const NameVector & | species | ) |
Setter for member variable Compartment::species.
void nmodl::ast::Compartment::set_species | ( | NameVector && | species | ) |
Setter for member variable Compartment::species (rvalue reference)
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inline |
Set token for the current ast node.
Definition at line 190 of file compartment.hpp.
void nmodl::ast::Compartment::set_volume | ( | const std::shared_ptr< Expression > & | volume | ) |
Setter for member variable Compartment::volume.
void nmodl::ast::Compartment::set_volume | ( | std::shared_ptr< Expression > && | volume | ) |
Setter for member variable Compartment::volume (rvalue reference)
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overridevirtual |
visit children i.e.
member variables of current node using provided visitor
Different nodes in the AST have different members (i.e. children). This method recursively visits children using provided visitor.
v | Concrete constant visitor that will be used to recursively visit children |
optional member could be nullptr
use -> for pointer member
visit each element of vector
Implements nmodl::ast::Ast.
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overridevirtual |
visit children i.e.
Compartment member functions definition.
member variables of current node using provided visitor
Different nodes in the AST have different members (i.e. children). This method recursively visits children using provided visitor.
v | Concrete visitor that will be used to recursively visit children |
optional member could be nullptr
use -> for pointer member
visit each element of vector
Implements nmodl::ast::Ast.
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private |
Name of the index variable in volume expression.
Definition at line 42 of file compartment.hpp.
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private |
The names of the species that reside in this compartment.
Definition at line 46 of file compartment.hpp.
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private |
token with location information
Definition at line 48 of file compartment.hpp.
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private |
The volume of the compartment.
Definition at line 44 of file compartment.hpp.